MARTIN LYNN BEGGS, M.D.

COLORADO SPRINGS, CO

Research Active
Thoracic Surgery (Cardiothoracic Vascular Surgery) NPI registered 21+ years 35 publications 1985 – 2025 NPI: 1629072228
RatsAlgorithmsArtificial IntelligenceBiomarkersKidneyRisk AssessmentEnzyme ActivationProtein KinasesMitochondria, LiverRadiography, ThoracicCoronary DiseaseDietary ProteinsMultienzyme Complexes3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide)Ketone Oxidoreductases

Practice Location

525 N FOOTE AVE
COLORADO SPRINGS, CO 80909-4501

Phone: (719) 365-5445

What does MARTIN BEGGS research?

Dr. Beggs studies several medical conditions and treatment methods, with a particular emphasis on the use of artificial intelligence to improve diagnostic accuracy in chest X-rays, helping doctors correctly identify issues such as endotracheal tube positions and pneumothoraces (collapsed lungs). He also investigates tools for assessing the cancer risk of lung nodules using blood tests, ensuring that patients receive accurate diagnoses without unnecessary procedures. Additionally, he explores rehabilitation strategies for athletes recovering from knee surgeries and the efficacy of nutrition supplements for preventing cardiovascular diseases in at-risk populations.

Key findings

  • In a study on identifying endotracheal tube placement, AI assistance improved clinician diagnostic accuracy from 73.6% to 77.4%.
  • AI assistance in detecting pneumothoraces increased diagnostic accuracy among clinicians from 66.8% to 78.1%, with junior doctors benefiting by a 21.7% increase.
  • A new blood test for lung nodules classified patients' cancer risk more accurately, reducing the intermediate risk classification from 26.7% to 10.8%.
  • Nutritional supplementation with essential amino acids and phytosterols led to an average drop of 95 mg/dl in triglycerides among participants.
  • A novel coronary heart disease risk assessment tool improved treatment planning among doctors, changing 70% of their plans to align more closely with guidelines.

Frequently asked questions

Does Dr. Beggs study lung cancer risk?
Yes, Dr. Beggs researches ways to assess lung cancer risk through innovative blood tests and other diagnostic tools.
What advancements in diagnostic imaging has Dr. Beggs contributed to?
He has made significant contributions to using artificial intelligence to enhance the accuracy of chest X-ray interpretations for critical conditions.
Is Dr. Beggs involved in sports medicine research?
Yes, he actively studies performance and wellbeing in professional rugby players, identifying key research priorities to improve athlete support.
What is the relevance of Dr. Beggs' work for patients with cardiovascular issues?
His research includes developing risk assessment tools for heart disease, which can help better manage treatment for patients at various risk levels.
How does Dr. Beggs' research help with ACL surgery recovery?
He emphasizes the importance of following specific rehabilitation guidelines to improve knee stability and recovery outcomes after ACL surgery.

Publications in plain English

Performance analysis of an artificial intelligence algorithm for detection and localisation of tracheal tube position by chest radiography.

2025

British journal of anaesthesia

Novak A, Ather S, Espinosa Morgado AT, Shah A, Bowness JS +8 more

PubMed

Are Virtual Forests Just for Relaxation, or Can They Enhance the Benefits of Therapy?

2025

Healthcare (Basel, Switzerland)

Hu YZ, Beggs M, Xue Y, Gao S, Seok J +5 more

Plain English
This study looked at whether virtual forests used for relaxation can also help reduce social anxiety. Researchers had 58 psychology students engage in a virtual forest, therapeutic exercises, or a combination of both. All methods helped people relax similarly, but only the therapy exercises alone seemed to lower social anxiety, while the combination provided better understanding and a more positive experience. Who this helps: This benefits individuals with social anxiety and mental health professionals providing therapy.

PubMed

'We're All (Cauliflower) Ears': A Delphi Study Including Staff and Players to Co-Construct Sports Science and Medicine (Performance and Wellbeing) Research Priorities for Premiership Rugby.

2025

European journal of sport science

Jones B, Heyward O, Cross M, Stokes K, McCarthy N +19 more

Plain English
This study focused on identifying the most important research areas related to player performance and wellbeing in Premiership Rugby, which is a professional rugby league in England. Researchers gathered input from 65 participants, including players and staff, and organized their suggestions into categories. They ultimately agreed on 21 key research priorities divided across three main themes: performance (7 priorities), wellbeing (6 priorities), and injury (8 priorities). This matters because establishing these priorities helps ensure that future research is relevant and can effectively improve the game and support the players. Who this helps: This benefits players, coaches, and medical staff involved in professional rugby.

PubMed

Evaluation of the impact of artificial intelligence-assisted image interpretation on the diagnostic performance of clinicians in identifying endotracheal tube position on plain chest X-ray: a multi-case multi-reader study.

2025

Critical care (London, England)

Novak A, Ather S, Morgado ATE, Maskell G, Cowell GW +28 more

Plain English
This study looked at how artificial intelligence (AI) can help doctors better identify the correct placement of endotracheal tubes (ETTs) in patients by analyzing chest X-rays. When doctors used AI assistance, their accuracy improved from 73.6% to 77.4%, and their ability to spot dangerously misplaced tubes went up from 79.3% to 89.0%. This is important because correctly positioning ETTs is crucial for patient safety and can prevent serious health issues. Who this helps: This helps clinicians and ultimately improves patient care.

PubMed

Evaluation of the impact of artificial intelligence-assisted image interpretation on the diagnostic performance of clinicians in identifying pneumothoraces on plain chest X-ray: a multi-case multi-reader study.

2024

Emergency medicine journal : EMJ

Novak A, Ather S, Gill A, Aylward P, Maskell G +28 more

Plain English
This study examined how using artificial intelligence (AI) to help interpret chest X-rays impacts clinicians' ability to accurately detect pneumothoraces (collapsed lungs). It involved 18 clinicians reviewing 395 X-ray images, and found that their ability to accurately identify pneumothoraces improved from 66.8% to 78.1% when assisted by AI, with junior readers seeing an even bigger increase of 21.7%. This matters because improved accuracy in detecting pneumothoraces can lead to quicker and more effective treatment, particularly benefiting less experienced doctors in emergency situations. Who this helps: Junior doctors and their patients in emergency care.

PubMed

Development and Validation of a Risk Assessment Model for Pulmonary Nodules Using Plasma Proteins and Clinical Factors.

2023

Chest

Vachani A, Lam S, Massion PP, Brown JK, Beggs M +4 more

Plain English
This study focused on creating a new way to assess the risk of lung nodules using blood proteins and other patient information. The researchers tested their model on nearly 1,000 patients and found that it better classified patients into risk categories: it reduced the number of patients considered to be at intermediate risk from 26.7% to 10.8% and increased those classified as low risk from 16.8% to 21.9%. This is important because it can help avoid unnecessary tests and speed up accurate diagnosis for patients with lung nodules. Who this helps: Patients with pulmonary nodules.

PubMed

POST-OPERATIVE CRITERION BASED REHABILITATION OF ACL REPAIRS: A CLINICAL COMMENTARY.

2018

International journal of sports physical therapy

Bousquet BA, O'Brien L, Singleton S, Beggs M

Plain English
This study looked at how to best rehabilitate patients after surgery to fix the anterior cruciate ligament (ACL) in the knee. The authors found that despite various surgical techniques, many patients still develop osteoarthritis, similar to those who did not have surgery. They emphasize the importance of following specific guidelines during rehabilitation to improve stability in the knee and encourage healing. Who this helps: This benefits patients recovering from ACL surgery and the specialists guiding their rehabilitation.

PubMed

Risk assessment for indeterminate pulmonary nodules using a novel, plasma-protein based biomarker assay.

2018

Biomedical research and clinical practice

Trivedi NN, Arjomandi M, Brown JK, Rubenstein T, Rostykus AD +12 more

Plain English
This research focused on creating a blood test to help determine the cancer risk of uncertain lung nodules found during screenings. The test, which analyzed proteins in the blood, evaluated 277 samples and was able to correctly classify 65% of ambiguous cases as either low or high risk for cancer, with a high accuracy rate—94%—for ruling out cancer presence. This is important because it can prevent unnecessary treatments for patients with non-cancerous nodules while also aiding in early cancer detection when it is most treatable. Who this helps: This helps patients with uncertain lung nodules by providing a safer way to assess their risk without invasive procedures.

PubMed

Analytical validation of a novel multi-analyte plasma test for lung nodule characterization.

2018

Biomedical research and reviews

Trivedi NN, Brown JK, Rubenstein T, Rostykus AD, Fish AL +11 more

Plain English
This study looked at a new blood test that helps determine whether a lung nodule is likely to be cancerous or not. The test measures three specific proteins and showed good accuracy and reliability, meaning it can help differentiate between benign and potentially malignant nodules with less than 10% variability in results. This is important because identifying non-cancerous nodules can prevent unnecessary medical procedures and reduce patient risk. Who this helps: This helps patients with lung nodules by providing clearer information about their condition.

PubMed

Nutritional Supplementation with Essential Amino Acids and Phytosterols May Reduce Risk for Metabolic Syndrome and Cardiovascular Disease in Overweight Individuals with Mild Hyperlipidemia.

2015

Journal of endocrinology, diabetes & obesity

Coker RH, Deutz NE, Schutzler S, Beggs M, Miller S +2 more

Plain English
This study looked at whether a nutritional supplement containing essential amino acids and phytosterols could help improve blood fat levels and insulin sensitivity in overweight adults with mild high triglycerides. After four weeks of taking the supplement, all nine participants showed a decrease in total cholesterol and LDL cholesterol, with six of them experiencing an average drop of 95 mg/dl in triglycerides. This is important because lowering these levels can help reduce the risk of serious health issues like metabolic syndrome and heart disease. Who this helps: This benefits overweight adults with high triglycerides and healthcare providers looking for ways to manage their patients' cardiovascular health.

PubMed

Cost effectiveness analysis of a next generation risk assessment score for cardiovascular disease.

2014

Journal of medical economics

Hytopoulos E, Lee ML, Beggs M, French C, Tong KB

Plain English
This study looked at a new tool called MIRISK VP that helps identify and treat people at risk for heart disease, specifically those who have no symptoms but are considered at intermediate risk. Researchers found that using MIRISK VP resulted in fewer deaths from heart disease and improved quality of life, adding about 0.12 to 0.17 more years of healthy life compared to traditional treatment strategies. Although it costs a bit more to use MIRISK VP, the benefits outweigh the costs, making it a worthwhile option for improving patient care. Who this helps: This benefits patients at risk for cardiovascular disease, as well as doctors who treat them.

PubMed

Company profile: Aviir, Inc.

2013

Pharmacogenomics

Beggs M, Biggs WH, French C

Plain English
Aviir, Inc. is a biotechnology company creating tests that help doctors and patients understand their risk for heart disease and other metabolic problems. Their main product, MIRISK VP™, helps identify people at a higher risk of having a heart attack. This is important because it allows for earlier intervention and better prevention of serious health issues. Who this helps: Patients at risk for cardiovascular disease and their doctors.

PubMed

Analytical performance validation of a coronary heart disease risk assessment multi-analyte proteomic test.

2013

Expert opinion on medical diagnostics

Nolan N, Tee L, Vijayakumar S, Burazor I, Hytopoulos E +4 more

Plain English
This research tested a new blood test designed to assess the risk of coronary heart disease (CHD) in people who are at an intermediate risk of developing the condition. They found that the test showed good accuracy, with a measurement reliability rate between 80% and 120%, and it worked well even when samples were affected by common substances like high bilirubin or lipids. This matters because it provides a reliable way to better identify individuals at risk for CHD, which can help in preventing serious heart problems. Who this helps: This benefits patients who are concerned about their heart health and doctors looking for better assessment tools.

PubMed

A stress-activated, p38 mitogen-activated protein kinase-ATF/CREB pathway regulates posttranscriptional, sequence-dependent decay of target RNAs.

2013

Molecular and cellular biology

Gao J, Wagnon JL, Protacio RM, Glazko GV, Beggs M +3 more

Plain English
Researchers studied how a specific signaling pathway in yeast cells manages the decay of certain RNA molecules during stress. They found that a sequence called M26 in RNA is crucial for determining which RNA molecules are degraded under stress; removing this sequence stops the degradation, while adding M26 to stable RNA can make it decay. This finding is important because it shows how cells can fine-tune gene expression during stressful conditions, allowing for better responses to environmental changes. Who this helps: This helps researchers and biologists understand cellular responses to stress in organisms.

PubMed

Clinical utility of a novel coronary heart disease risk-assessment test to further classify intermediate-risk patients.

2013

Clinical cardiology

Solomon MD, Tirupsur A, Hytopoulos E, Beggs M, Harrington DS +2 more

Plain English
This study looked at a new test designed to better evaluate the risk of coronary heart disease (CHD) in patients who are considered to be at intermediate risk. The findings showed that when doctors received results from this test, 70% of them changed their treatment plans to better align with established guidelines, improving their methods for cholesterol management from 57.6% to 74.6% of the time. This is important because it means patients may receive better-targeted treatments, reducing their risk of heart attacks. Who this helps: Patients at intermediate risk for coronary heart disease.

PubMed

Induction of cell proliferation and survival genes by estradiol-repressed microRNAs in breast cancer cells.

2012

BMC cancer

Yu X, Zhang X, Dhakal IB, Beggs M, Kadlubar S +1 more

Plain English
Researchers studied how estrogen affects breast cancer cells, specifically looking at the role of certain small molecules called microRNAs (miRNAs) that can regulate gene expression. They found that estrogen significantly increased the levels of important proteins involved in cell growth and survival by reducing the levels of specific miRNAs (miR-16, miR-143, and miR-203). This is important because it shows that these miRNAs may help suppress tumor growth in breast cancer, especially in cases that are sensitive to estrogen. Who this helps: This research benefits patients with estrogen-sensitive breast cancer.

PubMed

Coronary risk assessment among intermediate risk patients using a clinical and biomarker based algorithm developed and validated in two population cohorts.

2012

Current medical research and opinion

Cross DS, McCarty CA, Hytopoulos E, Beggs M, Nolan N +8 more

Plain English
This study focused on improving heart disease risk assessment in people who are considered to have an "intermediate" risk of coronary heart disease (CHD). Researchers developed a new algorithm that combines traditional risk factors like age and family history with seven specific blood protein measurements. They found that this combined approach improved risk predictions by 42.7%, which means many patients could be more accurately identified for necessary treatments, potentially preventing acute heart events. Who this helps: This benefits patients at intermediate risk of heart disease who may need better treatment plans.

PubMed

PTEN transcript variants caused by illegitimate splicing in "aged" blood samples and EBV-transformed cell lines.

2010

Human genetics

Liu Y, Malaviarachchi P, Beggs M, Emanuel PD

Plain English
This study looked at changes in a gene called PTEN, which can play a role in cancer, specifically how these changes happen in older blood samples. Researchers tested blood from 20 healthy individuals and found seven different variations in the PTEN gene's RNA when the blood was aged. These findings highlight that older blood samples might produce unreliable data about gene changes, affecting cancer research and diagnosis. Who this helps: This helps researchers and doctors who rely on accurate genetic information for cancer treatment and diagnosis.

PubMed

Functional genetic variants in the 3'-untranslated region of sulfotransferase isoform 1A1 (SULT1A1) and their effect on enzymatic activity.

2010

Toxicological sciences : an official journal of the Society of Toxicology

Yu X, Dhakal IB, Beggs M, Edavana VK, Williams S +6 more

Plain English
Researchers studied how certain genetic variations within a specific part of the sulfotransferase isoform 1A1 (SULT1A1) gene affect its activity in the body. They found three common genetic changes that influence this enzyme's function, with certain combinations of these changes linked to differences in enzyme activity. Specifically, two genetic variations were significantly associated with SULT1A1 activity in Caucasian individuals but not in African-American individuals. This discovery is important because it helps explain why some people may process medications or toxins differently based on their genetics. Who this helps: This helps patients who may respond differently to medications depending on their genetic makeup.

PubMed

Delivering the power of discovery in large pharmaceutical organizations.

2003

Drug discovery today

Peakman T, Franks S, White C, Beggs M

Plain English
This study looked at how large pharmaceutical companies can improve their drug discovery process, which has been facing challenges and declining productivity. The researchers found that while there are advancements in new testing methods, the overall process remains inefficient due to a lack of coordination among its many steps. This inefficiency leads to wasted resources and delays in delivering new medications. Who this helps: This benefits pharmaceutical companies and ultimately patients seeking new treatments.

PubMed

The High Throughput Screening Infrastructure: The Right Tools for the Task.

1999

Journal of biomolecular screening

Beggs M, Blok H, Diels A

Plain English
This study focused on how the pharmaceutical industry uses high throughput screening (HTS) to quickly find effective drug candidates. Researchers found that with modern HTS tools, companies can now test all potential drugs against specific targets in just weeks to months, greatly speeding up the discovery process. The advancements in automated systems and robotic technology are making it easier and faster to conduct these tests, which is crucial for developing new medications. Who this helps: This benefits pharmaceutical companies and patients looking for new treatments.

PubMed

Stacker Modules Used in a High-Capacity Robotics System for High Throughput Screening Compound Replication.

1999

Journal of biomolecular screening

Beggs M, Blok H, Mertens J

Plain English
This study looked at a new robotic system designed to improve the efficiency of drug screening in pharmaceutical companies. Researchers found that by using special storage units for test samples, the new system significantly speeds up the process, allowing labs to keep up with growing demands for testing—essentially providing a seamless connection between machines and human workers. This matters because it enhances the ability to discover new drugs more quickly, benefiting the entire pharmaceutical industry and ultimately leading to faster access to new treatments for patients. Who this helps: Patients and pharmaceutical companies.

PubMed

Differences in the prevalence of IS6110 insertion sites in Mycobacterium tuberculosis strains: low and high copy number of IS6110.

1997

Tubercle and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease

Fomukong N, Beggs M, el Hajj H, Templeton G, Eisenach K +1 more

Plain English
This study looked at how the bacterium Mycobacterium tuberculosis (M. tuberculosis), which causes tuberculosis, stores a piece of genetic material called IS6110. Researchers found that different strains of the bacterium have one to six copies of IS6110, with some preferred sites for insertion of these copies, specifically identifying a new site called DK1 that is common in strains with two to six copies. Understanding these genetic patterns is important because it helps researchers figure out how strains evolve and spread, which can improve treatments and control strategies for tuberculosis. Who this helps: This information benefits patients and healthcare providers by improving tuberculosis diagnosis and treatment options.

PubMed

Bioluminescence method to evaluate antimicrobial agents against Mycobacterium avium.

1995

Antimicrobial agents and chemotherapy

Cooksey RC, Morlock GP, Beggs M, Crawford JT

Plain English
This study explored a new method using bioluminescence to test how well different drugs can fight against Mycobacterium avium, a type of bacteria that can cause infection. Researchers found that after just three days, specific drug levels reduced light production from the bacteria to less than 10% of normal, showing that the drugs were effective. This method closely matched traditional testing methods, suggesting it can reliably and quickly help evaluate drug effectiveness. Who this helps: Patients with Mycobacterium avium infections.

PubMed

Ion capture assay for folate with the Abbott IMx analyzer.

1995

Clinical chemistry

Wilson DH, Herrmann R, Hsu S, Biegalski T, Sohn L +4 more

PubMed

Insulin-secreting beta-cells possess specific receptors for interleukin-1 beta.

1990

FEBS letters

Hammonds P, Beggs M, Beresford G, Espinal J, Clarke J +1 more

Plain English
This study looked at how a substance called interleukin-1 beta affects insulin release from insulin-producing beta-cells. They found that in the short term, it increased insulin secretion, but in the long term, it actually decreased insulin release. This is important because interleukin-1 beta is linked to diabetes, and understanding its effects could help in finding better treatments for the disease. Who this helps: Patients with diabetes.

PubMed

Interleukin-1 beta inhibits glucokinase activity in clonal HIT-T15 beta-cells.

1990

FEBS letters

Beggs M, Beresford G, Clarke J, Mertz R, Espinal J +1 more

Plain English
This study looked at how a substance called interleukin-1 beta (IL-1 beta) affects insulin-producing cells in the pancreas. Initially, IL-1 beta boosted insulin release and glucose use, but after 48 hours, it actually reduced both insulin output and glucose processing, suggesting the problem is linked to a decline in the enzyme glucokinase's activity. This matters because it helps us understand how inflammation can worsen insulin-dependent diabetes, influencing treatment strategies. Who this helps: This helps researchers and doctors working with diabetes patients.

PubMed

One-step chromatographic immunoassay for qualitative determination of choriogonadotropin in urine.

1990

Clinical chemistry

Osikowicz G, Beggs M, Brookhart P, Caplan D, Ching S +5 more

PubMed

Longer-term regulation of branched-chain-2-oxoacid dehydrogenase complex studied in rat hepatocytes in culture.

1989

The Biochemical journal

Beggs M, Shaw JM, Randle PJ

Plain English
Researchers studied how a protein-free diet affects certain enzymes in rat liver cells. They found that the diet decreased the activity of the branched-chain dehydrogenase complex by 50% and increased the related kinase activity, suggesting that branched-chain amino acids play a direct role in regulating these enzymes. This matters because understanding these mechanisms can help improve treatments for liver-related conditions. Who this helps: Patients with liver disorders.

PubMed

Assay of branched-chain alpha-keto acid dehydrogenase kinase in mitochondrial extracts and purified branched-chain alpha-keto acid dehydrogenase complexes.

1988

Methods in enzymology

Espinal J, Beggs M, Randle PJ

PubMed

Assay of total complex and activity state of branched-chain alpha-keto acid dehydrogenase complex and of activator protein in mitochondria, cells, and tissues.

1988

Methods in enzymology

Patston PA, Espinal J, Beggs M, Randle PJ

PubMed

Activity of branched-chain 2-oxo acid dehydrogenase complex in rat liver mitochondria and in rat liver.

1988

The Biochemical journal

Beggs M, Randle PJ

Plain English
This study looked at how different diets affect a specific enzyme complex in rat livers, called branched-chain 2-oxo acid dehydrogenase complex (BCDC). The researchers found that a high-protein diet increased BCDC levels by 31%, while starving the rats raised BCDC levels by 25%, but a protein-free diet lowered BCDC by 20%. These results matter because they enhance our understanding of how diet influences liver function, which can inform nutritional strategies for health and disease management. Who this helps: This helps patients and healthcare providers looking to optimize nutrition for better liver health.

PubMed

Temporal relationships in the effects of protein-free diet on the activities of rat liver branched-chain ketoacid dehydrogenase complex and kinase.

1987

FEBS letters

Beggs M, Patel H, Espinal J, Randle PJ

Plain English
This study looked at how a protein-free diet affected certain liver enzymes in rats. The researchers found that after just 4 days on a diet without protein, the crucial liver enzyme activity dropped significantly, and another related enzyme became more active. When the rats returned to a normal diet, they began to recover some enzyme activity within 24 hours, but fully going back to normal took 20 to 30 days. Who this helps: This helps doctors understand how diet impacts liver function in patients, particularly those who may be on protein-restricted diets.

PubMed

Effects of low-protein diet and starvation on the activity of branched-chain 2-oxo acid dehydrogenase kinase in rat liver and heart.

1986

The Biochemical journal

Espinal J, Beggs M, Patel H, Randle PJ

Plain English
This study looked at how a low-protein diet and starvation affect a specific enzyme in the livers and hearts of rats. Researchers found that a diet with no protein significantly increased the enzyme's activity in the liver by four times and in the heart by two times, while starving the rats had less impact. Understanding how these dietary changes affect this enzyme may help in managing conditions related to metabolism. Who this helps: This benefits researchers and healthcare professionals studying nutrition and metabolism.

PubMed

Effect of chlordane on influenza type A virus and herpes simplex type 1 virus replication in vitro.

1985

Journal of toxicology and environmental health

Beggs M, Menna JH, Barnett JB

Plain English
This study examined how chlordane, a pesticide, affects the ability of dog and monkey kidney cells to get infected by two viruses: influenza type A and herpes simplex virus 1. The researchers found that at a high concentration of 10 parts per million (ppm), chlordane significantly reduced the ability of the influenza virus to infect the cells, while lower exposure levels showed mixed effects (the lowest dose increased the infection efficiency). Importantly, chlordane did not have an impact on the herpes simplex virus. Who this helps: This research benefits scientists and public health officials studying the effects of environmental chemicals on viral infections.

PubMed

Frequent Co-Authors

J Espinal P J Randle Cynthia French Alex Novak Sarim Ather Giles Maskell Gordon W Cowell Claire Bloomfield Hilal Johnson Fergus Gleeson

Physician data sourced from the NPPES NPI Registry . Publication data from PubMed . Plain-English summaries generated by AI. Not medical advice.