JAMES KENNETH COLE, M.D.

INDIANAPOLIS, IN

Research Active
Orthopaedic Surgery - Orthopaedic Surgery of the Spine NPI registered 21+ years 50 publications 2025 – 2026 NPI: 1144227471
MicePhylogenyMachine LearningLarge Language ModelsMagnetic Resonance ImagingArtificial IntelligenceBiomarkersSurveys and QuestionnairesHIV InfectionsBacterial ProteinsParkinson DiseaseProtein Processing, Post-TranslationalAcetylationNeisseria gonorrhoeaeOrganophosphates

Practice Location

1550 E COUNTY LINE RD
INDIANAPOLIS, IN 46227-1000

Phone: (317) 497-2130

What does JAMES COLE research?

Dr. Cole studies numerous health-related issues, primarily looking at how diseases like cancer, Alzheimer's, and heart conditions interact with treatment approaches and patient care. He has researched the immune cells in the lungs, discovering different types of macrophages crucial for fighting infections. Moreover, he investigates how common medications like methotrexate can lead to severe health issues when misused. His work also includes innovating techniques using artificial intelligence for better patient predictions in Alzheimer's disease and understanding the biodegradability of infections like COVID-19, especially regarding heart complications. Dr. Cole’s approach emphasizes the importance of tailored treatment strategies that take into account individual patient responses and background.

Key findings

  • In his study on macrophages, Dr. Cole found that CCR1 receptors increase during bacterial infections, which helps guide treatment for lung infections.
  • He discovered that 57% of adults misusing methotrexate experienced serious health complications, emphasizing the need for patient education on medication.
  • Dr. Cole's AI tool accurately distinguished Alzheimer's patients from non-cognitive patients with a 97% accuracy rate, improving diagnostic reliability in Alzheimer's research.
  • His research on COVID-19 indicated that 13% of patients had myocarditis, providing insights into heart health post-infection.
  • In identifying genetic risks for heart disease, his test showed a remarkable accuracy score of 0.990 in predicting individuals with the APOE2 genotype.

Frequently asked questions

Does Dr. Cole study lung infections?
Yes, he researches how immune cells in the lungs respond to infections and their role in treatment.
What treatments has Dr. Cole researched?
He has studied the effects of medications like methotrexate, and the use of artificial intelligence in improving treatment for Alzheimer's patients.
Is Dr. Cole's work relevant for COVID-19 patients?
Yes, his research addresses heart complications in COVID-19 patients, providing valuable insights for their care.
How does Dr. Cole's research benefit heart disease patients?
His work helps identify genetic risks early, improving preventative strategies and patient outcomes.
What is a key finding about Parkinson's disease in Dr. Cole's research?
He found that visual input significantly affects how patients with Parkinson's initiate walking, which can inform rehabilitation strategies.

Publications in plain English

Prompting Pro Tips! Best Practices for Generating Clinical Narrative Summaries.

2026

Military medicine

Thota D, Alt D, Cole J, Tring VS

Plain English
This study looked at how to create better clinical summaries using advanced language models, specifically comparing detailed prompts with more vague ones. Researchers found that while both types of prompts resulted in similar adherence to instructions (64%), the detailed prompts led to better quality summaries—39% were considered adequate compared to just 9% with the vague prompts. However, the detailed prompts also had a downside, producing false information and biases more frequently. These findings are important because improving the quality of clinical summaries can enhance patient care in the Military Health System. Who this helps: This benefits healthcare providers and patients by improving the accuracy and reliability of clinical documentation.

PubMed

Decoding objective cough features in progressive pulmonary fibrosis: A 6-month feasibility study.

2026

The American journal of medicine

Feist MD, Huang Y, Kalluri M, Cole J, Naikyar E +4 more

Plain English
This study looked at whether a device could effectively track cough frequency in patients with progressive pulmonary fibrosis over six months. Out of eight patients, only one used the device as often as needed, but the data collected showed a link between cough intensity and how patients scored their cough-related issues on standard questionnaires. This is important because it indicates that long-term cough data from devices could help doctors monitor the progression of diseases like pulmonary fibrosis. Who this helps: Patients with progressive pulmonary fibrosis and their doctors.

PubMed

Association of CYP2C19 Phenotype on Historical Medication Prescribing for Gastroesophageal Reflux Disease.

2026

The Annals of pharmacotherapy

Cole J, Kodali L, Stark J, Fischer J

Plain English
This study looked at how different metabolic types of a gene, called CYP2C19, affected the prescribing of medication for gastroesophageal reflux disease (GERD). Researchers found that patients classified as ultrarapid or rapid metabolizers received similar doses of proton pump inhibitors (PPIs) compared to normal metabolizers, with average doses being 41.6 mg for ultrarapid, 40.1 mg for rapid, and 38.5 mg for normal metabolizers, and no difference in treatment failures or related complications among the groups. This matters because it shows that genetic variations in drug metabolism may not significantly influence prescribing practices or treatment outcomes for GERD in everyday settings. Who this helps: This information benefits doctors and healthcare providers managing GERD patients.

PubMed

Spatial profiling of giant cell arteritis tissues reveals immune heterogeneity and potential predictors of glucocorticoid response.

2026

Annals of the rheumatic diseases

Ansalone C, McAllister S, Pickerill ES, Zhang L, Gemperline DC +22 more

Plain English
This study focused on giant cell arteritis (GCA), a serious condition that can cause vision loss and other systemic issues, and how patients respond to glucocorticoids, the main treatment. Researchers analyzed tissue samples from patients at the start of their disease to find markers that could predict whether they would achieve sustained remission or continue to experience symptoms. They found that patients who did not achieve remission had signs of ongoing inflammation, while those who did had higher levels of certain immune cells, suggesting that identifying these markers can help doctors tailor treatments more effectively. Who this helps: This helps patients with giant cell arteritis by identifying who may need different therapies for better outcomes.

PubMed

Short-term neuropsychiatric outcomes following deep brain stimulation for Parkinson's disease.

2026

Parkinsonism & related disorders

De Paepe AE, Wang L, Zhang D, Pascual-Leone A, Kwei K +6 more

Plain English
This study examined the effects of deep brain stimulation (DBS) on anxiety and other mental health symptoms in patients with Parkinson's disease. Researchers looked at 59 patients who received either STN-DBS or GPi-DBS and found that 35.6% had significant anxiety before treatment. Those with STN-DBS experienced a notable reduction in anxiety, with 52.5% showing clinically meaningful improvement, while GPi-DBS also helped some patients, although to a lesser extent (26.3% improved). These results are important because they suggest that STN-DBS can effectively lower anxiety, which can greatly enhance the quality of life for these patients. Who this helps: This helps patients with Parkinson's disease and their doctors.

PubMed

Primary graft dysfunction in donor after brain death vs normothermic regional perfusion heart transplants.

2026

JHLT open

Vu Maffei M, Kozuch JM, Mariski M, Philbrick M, Topik A +6 more

Plain English
This study investigated the risks of primary graft dysfunction (PGD), a serious complication that can occur shortly after a heart transplant, comparing two types of organ donors: those who were brain-dead and those who had died from circulatory failure but underwent a process called normothermic regional perfusion (NRP) before donation. Out of 172 heart transplant patients, PGD occurred in 22% of those who received NRP donor hearts, compared to 13% for those who received hearts from brain-dead donors, with NRP linked to nearly three times the risk of PGD. This is important because PGD can lead to longer hospital stays and more complications, though the overall survival and heart function after transplant were similar between the two groups. Who this helps: This research benefits doctors and surgeons involved in organ transplantation by providing insights on donor selection and patient care following heart transplants.

PubMed

Perspectives of Heart Transplant Patients and Providers on Acute Rejection Surveillance: A Mixed-Methods Study.

2026

Clinical transplantation

Kim H, Cusi V, McLenon M, Rodriguez JBC, Bui QM +5 more

Plain English
This study looked at the views of heart transplant patients and their doctors on whether to switch from traditional biopsies to blood tests for detecting heart rejection. The researchers found that 78.4% of patients felt anxious about biopsies but prioritized having accurate tests for their heart health, with 91.1% trusting their doctors to choose the best testing method. The importance of clear communication and trust between patients and their healthcare providers was also highlighted, which matters because it can lead to better care decisions and improve patient outcomes. Who this helps: This benefits heart transplant patients and their healthcare providers.

PubMed

Congenital nerve sheath tumor in a dog.

2026

Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc

Cole J, Schaffer PA, Kirk NM

Plain English
Researchers studied a 5-week-old Leonberger puppy with a mass on its chest that was noticed at birth. After examining the mass, they found it was a rare congenital nerve sheath tumor, characterized by specific types of cells and markers that indicated its aggressive nature. This discovery is important because it adds to the limited knowledge about this type of tumor in dogs and can help guide future treatment options. Who this helps: This benefits veterinarians and pet owners dealing with similar cases in dogs.

PubMed

Reducing short-acting beta-agonist overprescribing in general practice: Evaluation of a quality improvement programme in East London.

2026

The European journal of general practice

De Simoni A, Hajmohammadi H, Pfeffer P, Cole J, Griffiths CJ +1 more

Plain English
This study looked at how to reduce the overprescribing of short-acting inhalers used for asthma in East London doctors' offices. The researchers found that, after implementing a quality improvement program, there was a significant decrease: only 12% of asthma patients were prescribed more than 6 inhalers a year, down from previous levels. This is important because overprescribing can lead to unnecessary hospital visits and health complications. Who this helps: Asthma patients and their doctors benefit from reduced overprescribing, leading to better management of their condition.

PubMed

Memories of Mark. Personal reflections by those in IFCN who worked with Mark Hallett.

2026

Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology

Burke D, Chen R, Eisen A, Nuwer M, Paulus W +4 more

PubMed

Patience and Patience Regulation: Development and Psychometric Evaluation of Complementary Scales with Alternate Forms.

2026

Journal of personality assessment

Furr RM, Waugh CE, Good RN, Ye C, Li J +3 more

Plain English
This research focused on patience as a personality trait and how it can be measured. The scientists created two new scales, the Patient Reaction (P-React) scale and the Patience Regulation (P-Reg) scale, which showed strong reliability and validity across 11 groups of nearly 2,000 participants. This matters because understanding and measuring patience better can impact various areas of psychology and personal development, helping people manage their responses in different situations. Who this helps: This benefits patients, psychologists, and researchers studying personality traits.

PubMed

Multiomic analyses of longitudinal plasma samples identify thromboinflammation endotypes and trajectories in patients with trauma.

2026

Science translational medicine

Cohen MJ, Erickson CB, Lacroix IS, Debot M, Dzieciatkowska M +23 more

Plain English
This study examined blood samples from trauma patients over time to understand how their bodies respond differently after similar injuries. Researchers found specific biological markers that indicated which patients were more likely to experience serious complications, like heart or lung failure, and how long they would need to stay in intensive care. For instance, signs of certain reactions in the blood could predict outcomes with high accuracy, highlighting the need for tailored treatments based on individual responses. Who this helps: This information benefits doctors and trauma patients by guiding more personalized care strategies.

PubMed

The influence of visual input and attention on gait initiation in people with Parkinson disease.

2026

PloS one

Duppen CP, Surkin J, Mahendar S, Saunders J, Cole J +2 more

Plain English
This study looked at how vision and attention affect the way people with Parkinson's disease start walking. Researchers found that when visual input was completely blocked, participants took shorter and slower first steps, with significant reductions in their balance adjustments. Even when only partially obstructed or when asked to focus on another task, people with Parkinson's still faced challenges in walking initiation, though the effects were not stronger compared to older adults without the disease. Who this helps: This research benefits patients with Parkinson’s disease and their healthcare providers by highlighting factors that influence walking difficulties.

PubMed

APOB to estimated APOB ratio for screening for the APOE2 genotype.

2026

medRxiv : the preprint server for health sciences

Auger C, Sampson M, Zubiran R, Cole J, Wolska A +3 more

Plain English
This study looked at how to identify patients with a specific genetic type (APOE2 genotype) that puts them at higher risk for heart disease. Researchers analyzed data from nearly 270,000 people and found that a new test based on a ratio of two blood protein levels (APOB/eAPOB) was highly effective, with an accuracy score of 0.990, in identifying those with the genotype before any symptoms appeared. This is important because it offers a simple way to spot individuals who could develop serious heart problems in the future, allowing for earlier intervention. Who this helps: This helps patients who are at risk of heart disease due to their genetics.

PubMed

Acetyl-Phosphate Dependent Protein Acetylation in Neisseria gonorrhoeae.

2026

MicrobiologyOpen

Parga EFD, Wolverson PA, Collins MO, Heaney O, Cole J +2 more

Plain English
This study focused on the bacteria that causes gonorrhea, called Neisseria gonorrhoeae, and how a process called acetylation affects its behavior. Researchers discovered that 88% of the proteins in this bacteria are acetylated, which is important for its ability to use sugars for energy and its overall ability to cause disease. Specifically, a modified strain of the bacteria grew faster and caused more harm in tests than the normal strain, showing that the level of acetylation influences its virulence. Who this helps: This research benefits doctors and researchers by providing insights into how gonorrhea works and potential new targets for treatment.

PubMed

Proteomic insights into troponin elevation following COVID-19 infection.

2026

Heart (British Cardiac Society)

Kamdar A, Ang DTY, Mangion K, McGuinness D, Lee J +11 more

Plain English
This study looked at why a specific protein, troponin-I, often increases in COVID-19 patients, even when there's no clear heart damage. Researchers followed 267 hospitalized COVID-19 patients and found that about 13% showed signs of myocarditis (inflammation of the heart muscle), and troponin levels were modestly elevated—9.3% of men had levels above 34 ng/L, while 4.5% of women had levels above 16 ng/L. Understanding these changes can help doctors better interpret heart health in COVID-19 patients and guide future treatments. Who this helps: This helps patients recovering from COVID-19 and doctors managing their care.

PubMed

AutoML-Multiverse: An Instability-Aware Framework for Quantifying Analytic Variability in Alzheimer's Disease Machine-Learning Studies.

2026

medRxiv : the preprint server for health sciences

Kohli M, Leal GC, Wyllie D, Oxtoby N, Leech R +2 more

Plain English
This study looked at how different choices in machine learning analysis can affect the results when studying Alzheimer's disease. Researchers found that their new tool, called AutoML-Multiverse, consistently produced reliable outcomes while examining nearly 20,000 different ways to analyze data from thousands of patients. For example, it correctly identified stable versus progressive mild cognitive impairment 68% of the time in one group and 63% in another, while it had a 97% accuracy in distinguishing Alzheimer's patients from those without cognitive issues. This matters because it helps create more reliable prediction models for Alzheimer's that can adapt to different types of data, ultimately leading to better patient care. Who this helps: Patients and doctors working in Alzheimer's research.

PubMed

HSR26-231: Diagnostic Performance of the Bexa™ Breast Exam for Detection of Breast Masses: A Prospective Single-Center Study.

2026

Journal of the National Comprehensive Cancer Network : JNCCN

Gary M, Hiatt M, Cole J, Battle A, Stewart J +4 more

PubMed

Methotrexate toxicity in the setting of oral therapeutic errors: a multicenter retrospective study.

2026

Clinical toxicology (Philadelphia, Pa.)

Moss M, Liss DB, Chambers AJ, Cumpston KL, Oakland C +5 more

Plain English
This study focused on adults who mistakenly took methotrexate—meant to be taken weekly—for more than one day. Researchers found that out of 54 cases studied, 57% experienced serious health issues, with common problems including mouth sores and low blood cell counts, and there were two deaths. Notably, patients who took methotrexate for less than three consecutive days or at doses below 37.5 mg did not suffer organ damage, highlighting the risk of significant harm from just a few days of incorrect use. Who this helps: This information is crucial for patients and healthcare providers to ensure proper medication use and prevent serious side effects.

PubMed

Chemokine receptor expression defines a trajectory from monocytes to mature macrophages in the lung.

2026

Journal of leukocyte biology

Mathie H, Medina-Ruiz L, Schuette F, Halawa H, Pocalun Z +4 more

Plain English
This research studied how certain receptors on immune cells in the lungs help differentiate these cells from monocytes (a type of white blood cell) to mature macrophages. The researchers found that there are three distinct types of macrophages in the lungs, each showing unique patterns of these receptors, which change as the cells mature. Specifically, they discovered that one receptor, CCR1, increases in response to bacterial infections but not viral ones, indicating that these receptors have unique roles in the immune response. Who this helps: This finding benefits doctors and researchers seeking to improve treatments for lung infections and inflammatory diseases.

PubMed

Perceived HIV Risk, Barriers, and Preferences for HIV Testing in Structurally Vulnerable Communities in St. Louis: A Best-Worst Scaling Survey.

2026

Journal of the International Association of Providers of AIDS Care

Tetteh EK, Le Tourneau N, Gross G, Swan M, Manning T +6 more

Plain English
This study looked at why people in certain communities in St. Louis, especially those who are Black, queer, and younger, may not get tested for HIV. Researchers found that 67% of participants felt at low risk for HIV, while 33% were worried about stigma and the fear of a positive result. Understanding these barriers is important because it helps create better testing strategies that can encourage more people to get tested. Who this helps: This helps patients and community health organizations working to improve HIV testing rates.

PubMed

Recommendations for reporting findings from analyses using artificial intelligence and machine learning in the.

2026

Journal of Alzheimer's disease : JAD

Teipel S, König A, Brem AK, Perry G, Moreira PI +3 more

Plain English
This research paper outlines five recommendations to improve how studies using artificial intelligence (AI) and machine learning (ML) report their findings for better understanding by doctors and researchers. The authors emphasize the need for clear explanations of how these AI methods work, what data was used, how success is measured, and the importance of being transparent about the models' decisions. Following these guidelines will help ensure that AI research is reliable and relevant for clinical applications. Who this helps: This helps doctors and researchers who use AI in healthcare.

PubMed

Embedding Artificial Intelligence Competencies in Military Medical Education: A Longitudinal Framework.

2026

Military medicine

Cole R, Peacock JG, Samuel A, Cole J, Duncan J

Plain English
Researchers are studying how to better prepare military medical students to use artificial intelligence (AI) tools in their work. They found that current AI education is mainly offered as electives and not integrated into the overall curriculum, leaving students unprepared to handle AI-related tasks in real-world situations. They propose a clear plan to include AI training throughout medical education, which will help students develop the skills they need to make informed decisions in challenging environments. Who this helps: This benefits military medical students and, ultimately, the patients they serve.

PubMed

Anthropometric Exclusions in Pediatric Clinical Trials: Implications for Medication Dosing in Malnourished Children.

2026

Journal of clinical pharmacology

Abdel-Rahman SM, Samuels S, Cole J, Burckart GJ

Plain English
This study looked at how often malnourished children are excluded from clinical trials for new medications. Out of nearly 10,000 studies reviewed, about 616 (or 35%) had rules that specifically limited participation for children showing signs of malnutrition, with 71% of studies excluding those who are undernourished and 9% for those overnourished. This matters because excluding these children means that the medicines might not be properly tested for the very ones who need them most, leading to risks in treatment effectiveness. Who this helps: This helps pediatricians and malnourished children by encouraging the inclusion of these vulnerable patients in clinical trials to ensure better medication safety and effectiveness.

PubMed

Variance reduction and measurement errors in estimating lactation milk yields using best prediction: An analytical review.

2025

JDS communications

Wu XL, VanRaden PM, Cole J, Norman HD

Plain English
This research reviewed a method called Best Prediction (BP) used in the U.S. since 1999 to estimate daily and total milk production in cows from known test-day results. The study found that while BP is more accurate than older methods, it tends to underestimate genetic diversity due to reduced variability in its estimates and suffers from errors when test-day records are incomplete or incorrect. This matters because inaccurate milk yield estimates can lead to less effective breeding decisions, impacting the quality of dairy production. Who this helps: This helps dairy farmers and geneticists working to improve milk production and livestock health.

PubMed

A dynamic histone-based chromatin regulatory toolkit underpins genome and developmental evolution in an invertebrate clade.

2025

Genome biology

Martín-Zamora FM, Cole J, Donnellan RD, Guynes K, Carrillo-Baltodano AM +3 more

Plain English
This study looked at how certain proteins called histones, which help regulate genes, affect development in a group of animals known as annelids, like worms. Researchers found that while most annelids have a stable set of histones, one species, Dimorphilus gyrociliatus, has a much simpler version, indicating that its evolution led to changes in histone regulation. Understanding these mechanisms is important because they show how gene regulation helps create the diversity and growth patterns seen in different species. Who this helps: This helps researchers studying developmental biology and evolution.

PubMed

Does restrictive anorexia nervosa impact brain aging? A machine learning approach to estimate age based on brain structure.

2025

Computers in biology and medicine

Gupta Y, de la Cruz F, Rieger K, di Giuliano M, Gaser C +12 more

Plain English
This study looked at how anorexia nervosa (AN), an eating disorder, affects brain aging by analyzing MRI scans from women aged 10 to 40. Researchers found that women with acute AN had brains that appeared about 2.25 years older than expected for their age, while those who had recovered from AN showed similar brain aging to healthy individuals. This is important because it indicates that severe malnutrition can accelerate brain aging, but recovery through weight restoration may help restore brain health. Who this helps: This benefits patients with anorexia nervosa, as well as doctors involved in their treatment and recovery.

PubMed

The impact of green spaces, urban settings, seasonal changes, and pollutants on dissemination of antimicrobial genes in air.

2025

Scientific reports

Duan Y, Cole J, Mkrtchyan HV, Xu Z

Plain English
This study looked at how green spaces, city environments, and air pollutants affect the spread of antimicrobial resistance genes (ARGs) in the air. Researchers found that areas with more plants had fewer ARGs in the air (0.0083 ARGs per 16S rRNA) compared to areas with little or no vegetation (0.0135 ARGs per 16S rRNA). Additionally, during times when central heating was off, the levels of ARGs decreased significantly in urban heat islands. This is important because reducing ARGs can help combat public health risks associated with antibiotic resistance. Who this helps: This benefits public health officials, urban planners, and communities seeking to improve air quality.

PubMed

CLONEID: A Framework for Longitudinal Integration of Phenotypic and Genotypic Data to Monitor and Steer Subclonal Dynamics.

2025

bioRxiv : the preprint server for biology

Veith T, Beck R, Tagal V, Li T, Alahmari S +12 more

Plain English
The study introduces CLONEID, a new tool that helps researchers track and analyze genetic and physical differences in cancer cells over time. By organizing detailed data about these differences, CLONEID aims to improve our understanding of how cancer cells evolve. This is important because it can lead to better strategies for monitoring and treating cancer. Who this helps: This benefits cancer researchers and doctors looking for more effective ways to manage and treat cancer patients.

PubMed

ApoB, LDL-C, and non-HDL-C as markers of cardiovascular risk.

2025

Journal of clinical lipidology

Sehayek D, Cole J, Björnson E, Wilkins JT, Mortensen MB +5 more

Plain English
This study looked at how well different blood markers—specifically apolipoprotein B (apoB), low-density lipoprotein cholesterol (LDL-C), and non-high-density lipoprotein cholesterol (non-HDL-C)—predict cardiovascular disease risk. The researchers analyzed data from 15 studies involving over 593,000 people and found that apoB was a better indicator of heart disease risk than LDL-C in all 9 studies that compared them. This finding is important because it suggests that doctors should use apoB as the main measure for assessing cardiovascular risk in patients, rather than relying on LDL-C or non-HDL-C, which are not as effective. Who this helps: This helps patients at risk for heart disease and their doctors in better assessing and managing their cardiovascular health.

PubMed

Publicly-Funded Treatment Outcomes and Their Correlates Among Clients Who Engage in Opioid-Methamphetamine Co-Use, Other Types of Polydrug Use, or Single Drug Use.

2025

Substance use & misuse

Cole J, Logan TK

Plain English
This study looked at the outcomes of drug treatment for people who use both opioids and methamphetamines, compared to those who use either multiple drugs or just one type. It found that individuals using both opioids and methamphetamines had worse results after a year, with only 30% meeting recovery criteria, while those using just one drug were more successful. This is important because it highlights the unique challenges faced by people who co-use these specific drugs, suggesting a need for targeted treatment strategies to improve their recovery chances and reduce overdose risks. Who this helps: This helps patients struggling with opioid and methamphetamine use, as well as their treatment providers.

PubMed

STING-adjuvanted outer membrane vesicle nanoparticle vaccine against Pseudomonas aeruginosa.

2025

JCI insight

Bjånes E, Krishnan N, Koh T, Ngo AT, Cole J +16 more

Plain English
This research studied a new type of vaccine designed to protect against Pseudomonas aeruginosa, a dangerous bacteria that can cause pneumonia and is resistant to many antibiotics. The vaccine, called Pa-STING CNP, successfully prompted strong immune reactions in animals, leading to effective protection against severe infections caused by different strains of the bacteria. This development is significant because it shows that advanced technology can create effective vaccines against tough infections that threaten vulnerable groups like the elderly and those with chronic health issues. Who this helps: Patients at risk of infections, especially the elderly and those with weakened immune systems.

PubMed

Bioethics for the planet.

2025

Lancet (London, England)

Anderson W, Troy J, Lucas T, Capon A, Komesaroff P +17 more

PubMed

Lung structural cells are altered by infeluenza virus leading to rapid immune protection following re-challenge.

2025

Nature communications

Worrell JC, Hargrave KE, Finney GE, Hansell C, Cole J +15 more

Plain English
This study looked at lung cells in mice after they were infected with the influenza virus to see how these cells change over time. Researchers found that specific lung cells remain altered long after the initial infection, especially in how they communicate with the immune system. For instance, these cells can respond faster to the virus later on, which could lead to better protection during future infections. Who this helps: This benefits patients by potentially improving their immune responses to influenza and other respiratory infections.

PubMed

Determining associations between prenatal maternal mental health and social determinants of health with outcomes in children with critical CHD.

2025

Cardiology in the young

Lisanti AJ, Min J, Hampton L, Cole J, Budney A +5 more

Plain English
The study looked at how a mother’s mental health and her social situation (like income and education) affect the health and development of children born with serious heart defects. Researchers found that mothers in a high-risk group, who struggled with mental health and social issues, had children who were born earlier, weighed less, and had poorer development outcomes than those in a low-risk group. Specifically, children from high-risk mothers had lower scores in cognitive, language, and motor skills. Who this helps: This research helps mothers with mental health challenges and their children by highlighting the need for better support during pregnancy and beyond.

PubMed

Hydrogels with Tethered Transcription Circuit Elements for Chemical Communication and Collective Computation.

2025

ACS nano

Chen KL, Cole J, Chou CH, Lindeman CW, Schaffter SW +4 more

Plain English
Researchers focused on how materials like hydrogels can communicate and work together, similar to how cells in our body communicate during healing. They created a series of mini-systems, called tethered genelets, that can send and receive signals over certain distances, with experiments showing these systems functioned correctly with 15 unique elements. This is significant because it could lead to smarter materials that can react and adapt to their environments, benefiting applications like soft robotics and responsive surfaces. Who this helps: This helps engineers and scientists developing advanced materials and robotic systems.

PubMed

Recent computational advances in the identification of cryptic binding sites for drug discovery.

2025

Bioinformatics advances

Gašparíková D, Chikhale R, Cole J, Pohl E

Plain English
Researchers studied "cryptic binding sites," which are hidden pockets in proteins that can be targeted by drugs. They found that new techniques, like machine learning, are more budget-friendly and quicker than traditional methods, but the lack of data has limited their effectiveness. Combining both approaches could improve the discovery of these hidden sites, leading to better drug development. Who this helps: This benefits drug developers and patients looking for new treatments.

PubMed

Repurposing Diflunisal as an Antivirulence Agent Against.

2025

Infectious microbes & diseases

Sun D, Haste NM, Sun J, Serafim MSM, Salvioni A +8 more

Plain English
This study looked at the drug diflunisal, which is usually used to reduce inflammation, to see if it can also fight off certain stubborn bacterial infections caused by Staphylococcus aureus (SA). The researchers found that diflunisal effectively reduces the production of a harmful toxin by these bacteria and helps make them more susceptible to antibiotics, enhancing the body’s ability to fight the infection. This is important because it offers a new way to treat infections that don't respond well to traditional antibiotics. Who this helps: This benefits patients with serious bacterial infections, especially those resistant to standard treatments.

PubMed

Rician Likelihood Loss for Quantitative MRI With Self-Supervised Deep Learning.

2025

NMR in biomedicine

Parker CS, Schroder A, Epstein SC, Cole J, Alexander DC +1 more

Plain English
This study focused on improving the accuracy of magnetic resonance imaging (MRI) by using a new training method for deep learning models that estimate tissue properties from MRI data. Researchers found that their new method, called Rician likelihood loss, significantly improved accuracy at low signal quality, reducing errors in parameter estimates by providing results that were more reliable even when the MRI data was noisy. As the signal quality improved, both the new method and the traditional approach performed well, but the new method had advantages in challenging conditions. Who this helps: This benefits patients undergoing MRI scans, as it can lead to more accurate assessments of their health conditions.

PubMed

Daily reality of food insecurity: A PhotoVoice study of food insecure residents in a rural, Southern state.

2025

Journal of hunger & environmental nutrition

Spear MJ, Vaughan JA, Barker C, Faitak B, Cole J +13 more

Plain English
This study investigated the everyday challenges faced by people dealing with food insecurity in rural Arkansas, where the problem is particularly severe. Seven residents shared their experiences through photos and discussions, revealing key issues like the difficulty of accessing healthy food due to high costs, the time needed to receive food assistance, and the importance of community support. Understanding these realities can lead to better programs and resources to help those struggling with food insecurity. Who this helps: This benefits food-insecure residents and the organizations working to support them.

PubMed

Chatbot assistance in precision oncology treatment decision-making.

2025

The oncologist

Burnette H, Fletcher K, Micheel C, Park BH, Johnson DH +4 more

Plain English
This study looked at how well AI chatbots can help doctors make treatment decisions in cancer care by analyzing complex patient data. The researchers tested 50 patient scenarios and found that the chatbots generally offered accurate treatment recommendations, but sometimes missed important options and suggested treatments not based on the patient's data when there were several mutations involved. This matters because it shows that while chatbots can aid in decision-making, they still need improvement to ensure they provide complete and relevant options for patients. Who this helps: Patients dealing with cancer treatments.

PubMed

The effect of pollutant exposure on cough in progressive pulmonary fibrosis.

2025

IJTLD open

Vander Linden H, Zanini U, Kalluri M, Cole J, Boulanger P +2 more

PubMed

Comparative genomic analysis of a metagenome-assembled genome reveals distinctive symbiotic traits in a Mucoromycotina fine root endophyte arbuscular mycorrhizal fungus.

2025

BMC genomics

Cole J, Raguideau S, Abbaszadeh-Dahaji P, Hilton S, Muscatt G +5 more

Plain English
This study explored the genetic makeup of a specific type of fungus that forms partnerships with plant roots, revealing that it has unique traits compared to other similar fungi. Researchers found that this fungus has features that suggest it can both help plants absorb nutrients and break down other microbes, while also having differences in how it interacts with the plant and its environment. These findings highlight how different fungi can play distinct roles in plant health and ecosystem dynamics. Who this helps: This helps researchers and farmers understand fungal relationships in agriculture, potentially improving crop health and yields.

PubMed

Using saturation rational function models to calculate yield adjustment factors across varied milking frequencies.

2025

JDS communications

Wu XL, Cole J, Miles AM, VanRaden PM

Plain English
This study looked at how often dairy cows are milked and how it affects the amount of milk they produce. The researchers found that milking more frequently usually results in higher milk yields, but the benefits level off after a point. They introduced a new model that more accurately calculates how much milk can be expected based on different milking schedules, achieving a high accuracy score of 0.999 compared to an older model's score of 0.994. Who this helps: This helps dairy farmers optimize their milking schedules for better milk production.

PubMed

Spherical Coordinate System for Dyslipoproteinemia Phenotyping and Risk Prediction.

2025

Journal of clinical medicine

Cole J, Sampson M, Remaley AT

Plain English
This study focused on developing a new system to classify types of lipid disorders (dyslipoproteinemia) and assess the risk of heart disease based on standard blood test results. Researchers analyzed data from over 37,000 people and discovered nine different lipid profiles that are linked to heart disease risk. Their new approach showed similar accuracy in predicting heart disease risk as current methods, potentially making it easier to identify at-risk individuals using just a blood test. Who this helps: This benefits patients by providing a more accurate and easy way to assess heart disease risk based on their lipid levels.

PubMed

Intersecting infections: the enhancing effect of Neisseria gonorrhoeae pathogenesis on HIV-1.

2025

AIDS (London, England)

Dhanjal A, Shaw JG, Cole J, Green LR

Plain English
This study looked at how the sexually transmitted infection Neisseria gonorrhoeae can worsen HIV-1 infections. Researchers found that having gonorrhea not only makes it easier for HIV-1 to spread but also increases the virus's replication and shedding in the body. With gonorrhea cases rising globally, better monitoring of both infections is crucial to control the spread of HIV-1, especially as treatment options for gonorrhea are becoming less effective due to drug resistance. Who this helps: This benefits patients with HIV-1 and gonorrhea, as well as healthcare providers managing these infections.

PubMed

Profiles of Depressive Symptoms Among Pregnant Patients Carrying Fetuses with Congenital Anomalies.

2025

Journal of clinical psychology in medical settings

Traino K, Budney A, Mani A, Zajac L, Paidas Teefey C +1 more

Plain English
This study looked at the types of depression symptoms experienced by pregnant individuals whose babies have congenital anomalies. Researchers found four main groups: 34% had minimal symptoms, 29% had trouble managing emotions, 27% felt anxious and had physical symptoms, and 11% experienced high levels of depression. These findings are significant because they help healthcare providers understand the different emotional challenges these patients face, which can lead to better support and treatment options. Who this helps: This research benefits pregnant individuals with high-risk pregnancies and their healthcare providers.

PubMed

Does the methanogenesis inhibitor 3-nitrooxypropanol affect milk yield in dairy cattle?

2025

Veterinary evidence

Cole J

Plain English
This research studied whether a substance called 3-nitrooxypropanol (3-NOP), which is intended to reduce methane emissions from cows, affects how much milk dairy cows produce. The findings showed that at lower doses (less than 80 mg per kilogram of feed), there was no significant impact on milk yield, while higher doses (at or above 80 mg) led to declines in milk production in some studies. This matters because it helps farmers understand that using 3-NOP might not affect milk production at low levels, but could harm it if used in higher amounts. Who this helps: Dairy farmers and cattle producers.

PubMed

Using Pretrained Large Language Models for AI-Driven Assessment in Medical Education.

2025

Academic medicine : journal of the Association of American Medical Colleges

Cole J, Duncan J, Cole R

Plain English
Researchers explored how artificial intelligence (AI) could help evaluate medical students' understanding of a complex topic called moral injury, particularly in military contexts. They tested a specific AI model by creating a grading system based on six key articles and grading 165 student responses, finding that the AI scored student work similarly to experienced educators, with a scoring agreement level of about 77% when compared to one reviewer. This method can make assessments faster and more consistent, which is important for improving the training of future health care professionals and ultimately enhancing patient care. Who this helps: This benefits medical students, educators, and patients by improving the educational assessment process.

PubMed

Readying Military Medicine for AI-Enabled Warfare.

2025

Military medicine

Cole R, Simmons S, Duncan J, Cole J, Peacock JG

Plain English
The study examines how artificial intelligence (AI) is changing warfare and the impact on military medicine. It found that military medical education and practices are not keeping up with these changes, which could leave them unprepared for future battles. Key issues identified include the need for better trauma training, improvements in medical logistics, and stronger ethical guidelines, along with specific recommendations like integrating AI scenarios into training exercises for medical staff. Who this helps: This benefits military medical personnel and ultimately improves care for soldiers on the battlefield.

PubMed

Frequent Co-Authors

Rebekah Cole Joshua Duncan Marieke Pingen Justin G Peacock Luke R Green Jonathan G Shaw Yoana Doncheva Claire Kennedy Dietrich Nigel B Jamieson Alexandria Budney

Physician data sourced from the NPPES NPI Registry . Publication data from PubMed . Plain-English summaries generated by AI. Not medical advice.